Using Galaxy and Managing your Data
A collection of microtutorials explaining various features of the Galaxy user interface and manipulating data within Galaxy.
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Material
Uploading Data
These tutorials will help you get data into Galaxy, before you analyse it.
| Lesson | Slides | Hands-on | Recordings |
|---|---|---|---|
|
Getting data into Galaxy
|
|||
| Rule Based Uploader | |||
| Rule Based Uploader: Advanced | |||
| SRA Aligned Read Format to Speed Up SARS-CoV-2 data Analysis |
Histories
Managing your analysis histories efficiently
| Lesson | Slides | Hands-on | Recordings |
|---|---|---|---|
|
Searching Your History
|
|||
|
Understanding Galaxy history system
|
Making Data Manageable
Now that you have data in Galaxy, let's make it easier to work with through collections and structured data.
| Lesson | Slides | Hands-on | Recordings |
|---|---|---|---|
|
Group tags for complex experimental designs
|
|||
| Multisample Analysis | |||
|
Name tags for following complex histories
|
|||
| Using dataset collections |
Workflows
Using Galaxy workflows to scale analysis
Analysing Data
Some advanced topics in data analysis.
| Lesson | Slides | Hands-on | Recordings |
|---|---|---|---|
| InterMine integration with Galaxy | |||
| JupyterLab in Galaxy | |||
| RStudio in Galaxy | |||
|
Use Jupyter notebooks in Galaxy
|
Download and free up space
Once you are done with your analyses in Galaxy, it's time to download your data and free up space.
| Lesson | Slides | Hands-on | Recordings |
|---|---|---|---|
|
Downloading and Deleting Data in Galaxy
|
Other
Assorted Tutorials
| Lesson | Slides | Hands-on | Recordings |
|---|---|---|---|
| Submitting sequence data to ENA |
Frequently Asked Questions
Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.
Follow topic updates rss-feed with our RSS Feed
Editorial Board
This material is reviewed by our Editorial Board:
Jennifer Hillman-Jackson
Helena Rasche
For any question related to this topic and the content, you can contact them or visit our Gitter channel.
Contributors
This material was contributed to by:
Delphine Lariviere
Avani Khadilkar
Maria Doyle
Helena Rasche
Bérénice Batut
Ekaterina Polkh
Anton Nekrutenko
Anne Pajon
Martin Čech
Simon Bray
Wolfgang Maier
Toby Hodges
Yo Yehudi
Charles Overbeck
Marius van den Beek
Fotis E. Psomopoulos
Adelaide Rhodes
Laila Los
Cristóbal Gallardo
Dave Clements
Elizabeth Sheets
Enis Afgan
Simon Gladman
Saskia Hiltemann
Miguel Roncoroni
John Chilton
Aysam Guerler
Jon Trow
Anne Fouilloux
Boris Depoortere
Daniela Butano
Björn Grüning
Bert Droesbeke
Funders
This material was funded by:
Gallantries